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Upgrade NixOS 24.05 -> 24.11 #227

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See #225 for the upgrade process documentation.

and related changes to documentation and templates
this removes some warning messages when running `nix flake check`

devShell.x86_64-linux is replaced by devShells.x86_64-linux.default
defaultTemplate is replaced by templates.default
due to the upgrade to Sphinx 7.4.0,
to have an acceptable option display in the TOC,
instead of a flattened tree
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